Regulatory networks of circRNAs related to transcription factors in Populus euphratica Oliv. heteromorphic leaves.
Identifieur interne : 000739 ( Main/Exploration ); précédent : 000738; suivant : 000740Regulatory networks of circRNAs related to transcription factors in Populus euphratica Oliv. heteromorphic leaves.
Auteurs : Lianghong Bao [République populaire de Chine] ; Shaowei Qin [République populaire de Chine] ; Cailin Li [République populaire de Chine] ; Zhongzhong Guo [République populaire de Chine] ; Lifeng Zhao [République populaire de Chine]Source :
- Bioscience reports [ 1573-4935 ] ; 2019.
Descripteurs français
- KwdFr :
- ARN messager (génétique), Facteurs de transcription (génétique), Feuilles de plante (croissance et développement), Feuilles de plante (génétique), Populus (croissance et développement), Populus (génétique), Régulation de l'expression des gènes végétaux (génétique), Réseaux de régulation génique (génétique), microARN (génétique).
- MESH :
- croissance et développement : Feuilles de plante, Populus.
- génétique : ARN messager, Facteurs de transcription, Feuilles de plante, Populus, Régulation de l'expression des gènes végétaux, Réseaux de régulation génique, microARN.
English descriptors
- KwdEn :
- Gene Expression Regulation, Plant (genetics), Gene Regulatory Networks (genetics), MicroRNAs (genetics), Plant Leaves (genetics), Plant Leaves (growth & development), Populus (genetics), Populus (growth & development), RNA, Circular (genetics), RNA, Messenger (genetics), Transcription Factors (genetics).
- MESH :
- chemical , genetics : MicroRNAs, RNA, Circular, RNA, Messenger, Transcription Factors.
- genetics : Gene Expression Regulation, Plant, Gene Regulatory Networks, Plant Leaves, Populus.
- growth & development : Plant Leaves, Populus.
Abstract
Circular RNAs (circRNAs) are a novel class of non-coding RNAs that are characterized by a covalently closed circular structure. They have been widely found in Populus euphratica Oliv. heteromorphic leaves (P. hl). To study the role of circRNAs related to transcription factors (TFs) in the morphogenesis of P. hl, the expression profiles of circRNAs in linear, lanceolate, ovate, and broad-ovate leaves of P. euphratica were elucidated by strand-specific sequencing. We identified and characterized 22 circRNAs related to TFs in P. hl at the four developmental stages. Using the competing endogenous RNAs hypothesis as a guide, we constructed circRNA-miRNA-TF mRNA regulatory networks, which indicated that circRNAs antagonized microRNAs (miRNAs), thereby influencing the expression of the miRNA target genes and playing a significant role in transcriptional regulation. Gene ontology annotation of the target TF genes predicted that these circRNAs were associated mainly with the regulation of leaf development, leaf morphogenesis, signal transduction, and response to abiotic stress. These findings implied that the circRNAs affected the size and number of cells in P. hl by regulating the expression of TF mRNAs. Our results provide a basis for further studies of leaf development in poplar trees.
DOI: 10.1042/BSR20190540
PubMed: 31790153
PubMed Central: PMC6911160
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Alar 843300, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Sciences, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Zhongzhong" sort="Guo, Zhongzhong" uniqKey="Guo Z" first="Zhongzhong" last="Guo">Zhongzhong Guo</name><affiliation wicri:level="1"><nlm:affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Sciences, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation></author><author><name sortKey="Zhao, Lifeng" sort="Zhao, Lifeng" uniqKey="Zhao L" first="Lifeng" last="Zhao">Lifeng Zhao</name><affiliation wicri:level="1"><nlm:affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Life Sciences, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Tarim University, Alar 843300, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Tarim University, Alar 843300</wicri:regionArea><wicri:noRegion>Alar 843300</wicri:noRegion></affiliation></author></analytic><series><title level="j">Bioscience reports</title><idno type="eISSN">1573-4935</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Expression Regulation, Plant (genetics)</term><term>Gene Regulatory Networks (genetics)</term><term>MicroRNAs (genetics)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (growth & development)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>RNA, Circular (genetics)</term><term>RNA, Messenger (genetics)</term><term>Transcription Factors (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN messager (génétique)</term><term>Facteurs de transcription (génétique)</term><term>Feuilles de plante (croissance et développement)</term><term>Feuilles de plante (génétique)</term><term>Populus (croissance et développement)</term><term>Populus (génétique)</term><term>Régulation de l'expression des gènes végétaux (génétique)</term><term>Réseaux de régulation génique (génétique)</term><term>microARN (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>MicroRNAs</term><term>RNA, Circular</term><term>RNA, Messenger</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Feuilles de plante</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Gene Regulatory Networks</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN messager</term><term>Facteurs de transcription</term><term>Feuilles de plante</term><term>Populus</term><term>Régulation de l'expression des gènes végétaux</term><term>Réseaux de régulation génique</term><term>microARN</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Circular RNAs (circRNAs) are a novel class of non-coding RNAs that are characterized by a covalently closed circular structure. They have been widely found in Populus euphratica Oliv. heteromorphic leaves (P. hl). To study the role of circRNAs related to transcription factors (TFs) in the morphogenesis of P. hl, the expression profiles of circRNAs in linear, lanceolate, ovate, and broad-ovate leaves of P. euphratica were elucidated by strand-specific sequencing. We identified and characterized 22 circRNAs related to TFs in P. hl at the four developmental stages. Using the competing endogenous RNAs hypothesis as a guide, we constructed circRNA-miRNA-TF mRNA regulatory networks, which indicated that circRNAs antagonized microRNAs (miRNAs), thereby influencing the expression of the miRNA target genes and playing a significant role in transcriptional regulation. Gene ontology annotation of the target TF genes predicted that these circRNAs were associated mainly with the regulation of leaf development, leaf morphogenesis, signal transduction, and response to abiotic stress. These findings implied that the circRNAs affected the size and number of cells in P. hl by regulating the expression of TF mRNAs. Our results provide a basis for further studies of leaf development in poplar trees.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31790153</PMID><DateCompleted><Year>2020</Year><Month>10</Month><Day>16</Day></DateCompleted><DateRevised><Year>2020</Year><Month>10</Month><Day>16</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1573-4935</ISSN><JournalIssue CitedMedium="Internet"><Volume>39</Volume><Issue>12</Issue><PubDate><Year>2019</Year><Month>12</Month><Day>20</Day></PubDate></JournalIssue><Title>Bioscience reports</Title><ISOAbbreviation>Biosci Rep</ISOAbbreviation></Journal><ArticleTitle>Regulatory networks of circRNAs related to transcription factors in Populus euphratica Oliv. heteromorphic leaves.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">BSR20190540</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1042/BSR20190540</ELocationID><Abstract><AbstractText>Circular RNAs (circRNAs) are a novel class of non-coding RNAs that are characterized by a covalently closed circular structure. They have been widely found in Populus euphratica Oliv. heteromorphic leaves (P. hl). To study the role of circRNAs related to transcription factors (TFs) in the morphogenesis of P. hl, the expression profiles of circRNAs in linear, lanceolate, ovate, and broad-ovate leaves of P. euphratica were elucidated by strand-specific sequencing. We identified and characterized 22 circRNAs related to TFs in P. hl at the four developmental stages. Using the competing endogenous RNAs hypothesis as a guide, we constructed circRNA-miRNA-TF mRNA regulatory networks, which indicated that circRNAs antagonized microRNAs (miRNAs), thereby influencing the expression of the miRNA target genes and playing a significant role in transcriptional regulation. Gene ontology annotation of the target TF genes predicted that these circRNAs were associated mainly with the regulation of leaf development, leaf morphogenesis, signal transduction, and response to abiotic stress. These findings implied that the circRNAs affected the size and number of cells in P. hl by regulating the expression of TF mRNAs. Our results provide a basis for further studies of leaf development in poplar trees.</AbstractText><CopyrightInformation>© 2019 The Author(s).</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bao</LastName><ForeName>Lianghong</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Qin</LastName><ForeName>Shaowei</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>CaiLin</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Zhongzhong</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Lifeng</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, Tarim University, Alar 843300, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Biosci Rep</MedlineTA><NlmUniqueID>8102797</NlmUniqueID><ISSNLinking>0144-8463</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000079962">RNA, Circular</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D053263" MajorTopicYN="N">Gene Regulatory Networks</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000079962" MajorTopicYN="N">RNA, Circular</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Populus euphratica Oliv.</Keyword><Keyword MajorTopicYN="Y">circRNAs</Keyword><Keyword MajorTopicYN="Y">regulatory networks</Keyword><Keyword MajorTopicYN="Y">transcription factors</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>03</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>11</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>12</Month><Day>02</Day></PubMedPubDate><PubMedPubDate 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Bao</name></noRegion><name sortKey="Guo, Zhongzhong" sort="Guo, Zhongzhong" uniqKey="Guo Z" first="Zhongzhong" last="Guo">Zhongzhong Guo</name><name sortKey="Li, Cailin" sort="Li, Cailin" uniqKey="Li C" first="Cailin" last="Li">Cailin Li</name><name sortKey="Qin, Shaowei" sort="Qin, Shaowei" uniqKey="Qin S" first="Shaowei" last="Qin">Shaowei Qin</name><name sortKey="Zhao, Lifeng" sort="Zhao, Lifeng" uniqKey="Zhao L" first="Lifeng" last="Zhao">Lifeng Zhao</name><name sortKey="Zhao, Lifeng" sort="Zhao, Lifeng" uniqKey="Zhao L" first="Lifeng" last="Zhao">Lifeng Zhao</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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